Defined in file : brainvisa/types/builtin.py
[Atlas] Convert Volume of Labels / ROI graph
color normalization GAN
compare two transformations
compute histogram analysis Generic
compute intensity normalization
Compute Statistic on Volume ( label or mask )
Copy data between databases
Copy Referential
Create Cortical Thickness Texture
Create Mesh Median Surface
GeneralImport
Graph Point cloud Label
Import FSL Connectomes.
Import new assessment (dicom)
Import volBrain results into a brainvisa database
ImportData
ImportGraph
Measure the offset from SPM realign
ml - Classify features image
ml - Dictionary Learning (test)
ml - Fast model generation and testing
ml - Finding the optimal threshold
ml - Independant evaluation
ml - Independent evaluation
ml - K Nearest neighbors cross-validation
ml - Logistic regression cross-validation
ml - Logistic regression cross-validation + Classes selection
ml - Parallel classification
ml - Segmentation pipeline
ml - Support Vector Machines cross-validation
ml - Weighted Random Forest
ml - Weighted Random Forest pipeline
ml - Weighting Random Forest (+ cross-validation)
Müller-Gärtner
New Referential
Nuclear Imaging quality check
QC recons SPECT
Quantification
Rename denoised_* to nobias_*
SPM quantification
spm12 - Model Review - generic
spm8 - VBM Segmentation - generic
Sulci Deep CNN training
Sulci recognition with Deep CNN
uncompress any disk item
Validity Indexes
Write a different measures in csv file
Aims bundles
Aims scalar features
Aperio svs
ASCII results
AVI film
BMP image
BrainVISA session event
BrainVISA/Anatomist animation
Bucket
Bundle Selection Rules
Bval File
Bvec File
bz2 Matlab file
Commissure coordinates
Config file
CSV file
Database Cache file
DEF Label Translation
DICOM image
Directory
ECAT i image
ECAT v image
EPS file
FDF image
File
Filter file
FreesurferAvgCurv
FreesurferCurv
FreesurferCurvPial
FreesurferIsin
FreesurferLabel
FreesurferMGH
FreesurferMGZ
FreesurferParcellation
FreesurferPial
FreesurferSphereReg
FreesurferThickness
FreesurferWhite
GIF image
GIFTI file
GIS image
Graph
Graph and data
Gyri Model
gz compressed ECAT i image
gz compressed ECAT v image
gz compressed GIFTI file
gz compressed GIS image
gz compressed MESH mesh
gz compressed MINC image
gz compressed MNI OBJ mesh
gz compressed NIFTI-1 image
gz compressed PLY mesh
gz compressed PS file
gz compressed SPM image
gz compressed TAR archive
gz compressed Texture
gz compressed TRI mesh
gz compressed VIDA image
gz Matlab file
gzipped XML
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
HDF5 File
Hierarchy
Histo Analysis
Histogram
HTML
Info file
JPEG image
JSON file
Label Translation
Leica scn
Log file
Matlab file
Matlab script
mdsm file
MESH mesh
MINC image
MINC transformation matrix
Minf
MIRAX mrxs
MLP classifier
MNG image
MNI OBJ mesh
Moment Vector
MP4 film
MPEG film
NIFTI-1 image
Numpy Array
OGG film
PBM image
PDF File
PGM image
Phase image
pickle file
Plot results
PLY mesh
PNG image
PPM image
Process execution event
PS file
Python Script
Quality Check Report
QuickTime film
Referential
Sakura svslide
Selection
Series of BMP image
Series of FreesurferLabel
Series of GIF image
Series of GIS image
Series of JPEG image
Series of MNG image
Series of PBM image
Series of PGM image
Series of PNG image
Series of PPM image
Series of SPM image
Series of TIFF image
Series of TIFF(.tif) image
Series of XBM image
Series of XPM image
Sigraph Learner
siRelax Fold Energy
SNNS pattern
Soma-Workflow workflow
Sparse Matrix
SPM image
SQLite Database File
SVG file
SVM classifier
Template model
Template model domain
Text Data Table
Text file
Texture
TIFF image
TIFF(.tif) image
Trackvis tracts
Transformation matrix
Tree
TRI mesh
Ventana bif
VIDA image
XBM image
XLS file
XLSX file
XML
XPM image
Z compressed ECAT i image
Z compressed ECAT v image
Z compressed GIFTI file
Z compressed GIS image
Z compressed MESH mesh
Z compressed MNI OBJ mesh
Z compressed PLY mesh
Z compressed SPM image
Z compressed Texture
Z compressed TRI mesh
Z compressed VIDA image
Zeiss czi
ZIP file
side , manually_labelled , automatically_labelled
protocol , subject , filename_variable , acquisition , side , source.subject , dest.subject , source.acquisition , dest.acquisition , center , analysis , template , volume , spm_normalized , sulcus_name , race , category , sulciGraph , sulci_recognition_session , manually_labelled , automatically_labelled , graph_version , warped_to_vishnu , transformation , warping_method , covariate_table , camera , name_serie , marker , direction , step , contrast , parallel_recognition , tissue_class , modulation , modality , group_name , mesh
phantom , center , acquisition , reconstruction , filename_variable , protocol , study , reconstructionTags , sphereDiameter , group_of_subjects , reconstructionTag , subject
subject , side , time_sequence , filename_variable , space , freesurfer_group_of_subjects , inflated , atlas
subject , filename_variable , trackfileum , numberoftrackfiles
Size , referential , skull_stripped
modality , manufacturer , device_model , center_device_id , filename_variable
center , subject , processing , acquisition , tracer , analysis , description , reconstruction , ROIReference , ROIStat , PVC_method , rescan , acquisition_date , time_point , time_duration , reconDiam , tracking_session , method , studyname , gyrus , smoothing , smallerlength , greaterlength , reduced , ends_labelled , group_of_subjects , sid , mapped , contrast , space , modality , side , Study , Template , graph_version , sulci_recognition_session , manually_labelled , automatically_labelled , segmentation_method , from , origin_subject , template , pet_tracer , pet_acquisition , ancillary_name , factoriel_design , first_group , second_group , fwhm , nuisance_covariate_list , interest_covariate_list , pet_intersection , research_group , subject_age , volume , roiName , VOIStatistic , VOIReference , normalization , tissue_class , vertex_corr_method , labelStat , source.acquisition , destination.acquisition , bin_unit , filename_variable , region , hoffman_id , matter_type , modulated , ROI_name , best , sulcus_name , reconstruction_diameter , acquisition_sequence , factorial_design , group_name , statLabel , recons , race , date , study , scan_session , marker , specie , serie , scan_number , photo_number , inflated , slice_number , start_frame , end_frame , contrast_type , contrast_index , basename , normed , atlas , covariateName , sulcus , template_name , transformation , warping_method , extracted_level , covariate_table , camera , direction , step , qcid , volumeStat , transformed , modulation , ROIName , optimal , measure , roi_autodetect , roi_filtered , step_time , oversampled , first_frame , last_frame , assessment_type , atlasname , baseline_acquisition , type , covariate_table_id , mesh , explicit_mask
spm_render , step , template , SPM_version
sulci_database , model_element_type , filename_variable , graph_version , side , trained , talairach , model , VOIStatistic , sulci_segments_model_type , VOIReference , atlas , resolution , icosphere_type , vertices , Size , smoothing_sigma , atlasname , referential , skull_stripped , explicit_mask
protocol , subject , acquisition , analysis , center , from , side , tracer , reconstruction , ROIReference , template , graph_version , sulci_recognition_session , reconDiam , volume , normalization , t1mri , pet , contrast , filename_variable , manually_labelled , automatically_labelled , best , sulcus_name , race , covariateName , sulcus , transformation , warping_method , start_frame , end_frame , covariate_table , camera , direction , step , name_serie , group_of_subjects , qcid , tissue_class , modulation , method , modality , group_name , ROIStat , date , mesh